PARALLEL-PROCESSING SYSTEMS AND METHODS FOR HIGHLY SCALABLE ANALYSIS OF BIOLOGICAL SEQUENCE DATA
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Nov 20, 2015
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Nov 21, 2014
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Abstract
An apparatus includes a memory configured to store a sequence that includes an estimation of a biological sequence. The sequence includes a set of elements. The apparatus also includes an assignment module implemented in a hardware processor. The assignment module is configured to receive the sequence from the memory, and assign each element to at least one segment from a set of segments, including, when an element maps to at least a first segment and a second segment, assigning the element set of segments specific to that hardware processor, and substantially simultaneous with the remaining hardware processors, remove at least a portion of duplicate elements in that segment to generate a deduplicated segment. Reorder the elements in the deduplicated segment to generate a realigned segment that has a reduced likelihood for alignment errors
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