SPLIT, BREAK, SUBSTITUTE, AND FRAGMENT-SPLICE OPERATIONS FOR COMPUTER MODELS OF ENZYME CASCADES, METABOLIC SIGNAL TRANSDUCTION, SIGNALING PATHWAYS, CATALYTIC CHEMICAL REACTION NETWORKS, AND IMMUNOLOGY
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United States of America Patent
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Issued Date -
May 8, 2014
app pub date -
Jan 8, 2014
filing date -
Apr 26, 2009
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Abstract
Computer utilities for adapting data and properties of computer modeled biochemical pathways for use in a modified form. Utilities can be provided for split, break, substitute, and fragment-splice operations are presented for computer models of enzyme cascades, metabolic signal transduction, signaling pathways, catalytic chemical reaction networks, and immunology. Substitution operations can be used in situations where a specific portion of a modeled biochemical pathway is identified and replaced with an alternate topologically-compatible portion of a modeled biochemical pathway. Split/break operations can be used to break a modeled biochemical pathway into two or more fragments. Splice operations can be used to splice fragments obtained from previous editing operations. These and other operations can be used to introduce a new node or pathway hop in a step in a modeled biochemical pathway. The invention provides for resultant modeled biochemical pathway to comprise added feedback, feedforward, allosteric and/or non-allosteric modulation attributes and components.
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