Apparatus and Method for Searching for Multiple Inexact Matching of Genetic Data or Information
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United States of America Patent
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Issued Date -
Sep 11, 2008
app pub date -
Jan 14, 2005
filing date -
Jan 16, 2004
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Abandoned
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Abstract
A computer implemented method of searching genetic data or information for a plurality of query sequences in a set of target sequence fragments, allowing for mismatches at up to n sequence positions, including dividing each query sequence of the plurality of query sequences into n+1 query sequence segments and dividing each target fragment of the target sequence fragments into at least n+1 target sequence fragment segments, for each query sequence, constructing a first query group and a second query group by distributing query sequence segments there between such that at least n query sequence segments are contained in the second query group, constructing from each target fragment a first target group having a same distribution as the first query group, and for each query sequence, comparing the first query group with each first target group to identify potential matching target fragments.
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